将排队对比的序列文件(以FASTA或GDE格式)拷贝到以下区域。如果包括已知三维结构蛋白序列,识别与类似性计算也将包括此序列。 >CbrigsFEM-2 MSGPPPPKTNEKSSQPVTG-RSQEPTRKGQLGPNYLRIIEEDEEYGHALL EPSEEQIKFEREALFEDLHLDRQRSARSFIEETFEEEMLGPQN-GIPPTT ESPQSYIPIRYRNPPAAAPVHDVFGDAVHAIFQKLMTRGPPVEYCHWMSY WIAKQID-KDSPVKYHECRFTPDQYVTENTAEAKKTYMDNMWKAAEKNLW MYTYNSPLLRTKWTGIHVSAEQIKGQRHKQEDRFVA-YPNSLYMDTSRSD HIALLGVFDGHGGHECSQYAAGHMWETWIETRASHFEE------PLEKQL KTSLDLLDERMTVRSTKE--CWKGGTTAVCCAIDMNKKELAFAWLGDSPG YIMDNLEVRKVTRDHSPSDPEEGRRVEEAGGQLFVIGGELRVNGVLNLTR ALGDV---------PGRPMISNQAETCQRDIEVG---DYLVILACDGISD VFNTSDLYNLVQAYVNENPVEEYNDLAHYICHEAIAHGSTDNVTVV-IGF LRPPQDLWRMMKIDEESDEEEDEVDDE----------------------- ------------------------------------------- >CremFEM-2 ----MSDSLNHPSSSTVHADDGFEPPTSP----------EDNNK------ KPSLEQIKQEREALFTDLFADRRRSARSVIEEAFQNELMSAE--PVQPNV PNPHS-IPIRFRHQPVAGPAHDVFGDAVHSIFQKIMSRGVNADYSHWMSY WIALGID-KKTQMNYHMKPFCKDTYATEGSLEAKQTFTDKIRSAVEEIIW KSAEYCDILSEKWTGIHVSADQLKGQRNKQEDRFVA-YPNGQYMNRGQSD -ISLLAVFDGHGGHECSQYAAAHFWEAWSDAQHHHSQDM-----KLDELL EKALETLDERMTVRSVRE--SWKGGTTAVCCAVDLNTNQIAFAWLGDSPG YIMSNLEFRKFTTEHSPSDPEECRRVEEVGGQIFVIGGELRVNGVLNLTR ALGDV---------PGRPMISNKPDTLLKTIEPA---DYLVLLACDGISD VFNTSDLYNLVQAFVNEYDVEDYHELARYICNQAVSAGSADNVTVV-IGF LRPPEDVWRVMK--TDSDDEESELEEEDDNE------------------- ------------------------------------------- >CeleFEM-2 -------------------------------------------------- ---MEKVNEERDAVFEDHIGDRRRSVRSLLEEAFADEMEKTSYDVEVADT PQPH--IPIRFRHPPIAGPVHDVFGDAIHDIFQKMMKRGQAVDFCHWVSH LIATEIDEKFSEVAFRDVQYNPDIYVTDSTTEAKKLFNDKIWPAIDKILQ QNAETCPILSEKWSGIHVSGDQLKGQRHKQEDRFLA-YPNGQYMDRGEDP -ISVLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSD-----SLEDQL RKSLELLDERMTVRSVKE--CWKGGSTAVCCAIDMDQKLMALAWLGDSPG YVMSNIEFRQLTRGHSPSDEREARRVEEAGGQLFVIGGELRVNGVLNLTR ALGDV---------PGRPMISNEPETCQVPIESS---DYLVLLACDGISD VFNERDLYQLVEAFANDYPVEDYAELSRFICTKAIEAGSADNVSVV-IGF LRPPQDVWKLMK--HESDDEDSDVTDEE---------------------- -------------------------------------------
将对比的已知三维结构序列拷贝到以下区域(注意包括序列名称)生成的脚本文件仅能用于描述此序列的三维分子文件。 >humanPP2Calpha -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------------------MGAFLD KPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLES---- -WSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGI RTGFLEIDEHMRVMSEKKHGADRSGSTAV--GVLISPQHTYFINCGDSRG LLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI----QRVNGSLAVSR ALGDFDYKCVHGKGPTEQLVS--PEPEVHDIERSEEDDQFIILACDGIWD VMGNEELCDFVRSRLE--VTDDLEKVCNEVVDTCLYKGSRDNMSVILICF PNAPKVSPEAVK--KEAELDKYLECRVEEIIKKQGEGVPDLVHVMRTLAS ENIPSLPPGGELASKRNVIEAVYNRLNPYKNDDTDSTSTDDMW
使用以下两个选项以改变多序列对比图的外观。
选择你希望使用的颜色。缺口(已知三维结构序列与其它序列缺口对比的氨基酸)具有最高颜色优先级别,其后是相同氨基酸,再后是类似氨基酸。
输入所使用的类似性氨基酸组,以逗号分隔。 ILV,FWY,KRH,DE,GAS,P,C,TNQM